DATABASE SUBJECT TO UPDATES
Please cite: Ma, Srivastav, Gamez. et al. Lau, NC. Genome Research 2021
Click on the Links for MSRG
output files, all based on this specific genome assembly:
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| Table S4. Meta-table of sequencing analysis statistics and curated list of genic and intergenic piRNA cluster loci (piRCLs) | Mosquito arborviruses FASTA file: 2020-04-25 | |||||||||
| # | Study Year | Study PI | Study Name | Pubmed Citation | Cells and Tissues Sampled | NCBI Accesion | Bigwig Outputs | Genecentric Outputs | Lengths and miRNAs | piRNA Phasing | Structural RNAs | Transposons | Viruses | Wolbachia | ||
| 1 | 2011 | Peter Atkinson | AeAeg_sRNAs_Atkinson_lab _SRP009254 | PMC3259105 | AeAeg_LVP_pMos3DBhspPBac AeAeg_ORL AeAeg_ORL_autoHermes257 AeAeg_ORL_pMos3DB2Her_r1 AeAeg_ORL_pMos3DB2Her_r2 AeAeg_ORL_pBac3EB2Mos_r1 AeAeg_ORL_pBac3EB2Mos_r2 |
GSE33595 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 2 | 2012 | Kevin Myles | AeAeg_sRNAs_Myles_lab_ SRP008316 | PMC3252369 | AeAeg_WholeBody_CHIKV |
GSE322474 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 3 | 2013 | Bruce Hay | AeAeg_sRNAs_Hay_Lab_ PMC3755910 | PMC3755910 | AeAeg_Embryo_0-2h_BH_cat |
PRJNA612346 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 4 | 2012 | Zach N. Adelman | AeAeg_sRNAs_Adelman_Lab_GSE35161 | PMC3386798 | AeAeg_Whole_fem_SVNoVB_ZA AeAeg_Whole_fem_SV_ZA AeAeg_Whole_fem_ZA |
GSE35161 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 5 | 2013 | Alain Kohl | AeAeg_sRNAs_Kohl_Lab_PRJEB3362 | PMC3571378 | AeAeg_Aag2_SBV1_AK AeAeg_Aag2_SBV2_AK AeAeg_Aag2_BTV1_AK AeAeg_Aag2_BTV2_AK |
PRJEB3362 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 6 | 2014 | Zhejian Tu | AeAeg_sRNAs_Tu_lab_ SRP034669 | PMC4361387 | AeAeg_Male_Whole |
PRJNA232374 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 7 | 2016 2012 |
Ronald van Rij | AeAeg_sRNAs_VanRij_lab_ SRA303329 | AeAeg_Aag2NT |
LINK | LINK | LINK | LINK | LINK | LINK | ||||||
| 8 | 2015 | Ronald van Rij | AeAeg_sRNAs_VanRij_lab_ SRA188616 | PMC4513867 | AeAeg_Aag2SINV_dsLuc(123) |
PRJNA266885 | LINK | LINK | LINK | LINK | LINK | LINK | LINK | |||
| 9 | 2015 | Zach N. Adelman | AeAeg_sRNAs_Adelman_Lab_GSE65070 | PMC4402513 | AeAeg_Aag2_GFP_rep1_ZA AeAeg_Aag2_GFP_rep2_ZA AeAeg_Aag2_GFP_rep3_ZA AeAeg_Aag2_R2D2_rep1_ZA AeAeg_Aag2_R2D2_rep2_ZA AeAeg_Aag2_R2D2_rep3_ZA AeAeg_Aag2_R3D1_rep1_ZA AeAeg_Aag2_R3D1_rep2_ZA AeAeg_Aag2_R3D1_rep3_ZA AeAeg_Aag2_R3D1B_rep1_ZA AeAeg_Aag2_R3D1B_rep2_ZA AeAeg_Aag2_R3D1B_rep3_ZA |
GSE65070 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 10 | 2015 | Joao T. Marques | AeAeg_sRNAs_Marques_Lab_PRJNA277466 | PMC4513865 | AeAeg_Whole_sm_rep1_JM AeAeg_Whole_sm_rep2_JM AeAeg_Whole_sm_rep3_JM AeAeg_Whole_lg_rep1_JM AeAeg_Whole_lg_rep2_JM AeAeg_Whole_lg_rep3_JM | PRJNA277466 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 11 | 2016 | Kevin Myles | AeAeg_sRNAs_Myles_lab_ SRP073949 | PMC5137771 | AaAeg_whole_SINV_NtfCtrl |
GSE80691 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 12 | 2017 | Grant Hughes | AeAeg_sRNAs_Hughes_lab_2017_ GSE97523 | PMC4513867 | AeAeg_LVP_pMos3DBhspPBac AeAeg_ORL AeAeg_ORL_autoHermes257 |
PRJNA266885 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 13 | 2017 | Alain Kohl | AeAeg_sRNAs_Kohl_Lab_PRJNA396680 | PMC5667879 | AeAeg_Aag2_eGFPIP1_AK AeAeg_Aag2_eGFPIP2A_AK AeAeg_Aag2_eGFPIP2B_AK AeAeg_Aag2_Piwi4IP1_AK AeAeg_Aag2_Piwi4IP2A_AK AeAeg_Aag2_Ago3IP1_AK AeAeg_Aag2_Ago3IP2B_AK AeAeg_Aag2_Ago2IP1_AK AeAeg_Aag2_Ago2IP2A_AK AeAeg_Aag2_Piwi5IP1_AK AeAeg_Aag2_Piwi5IP2A_AK AeAeg_Aag2_Piwi6IP1_AK AeAeg_Aag2_Piwi6IP2A_AK AeAeg_Aag2_Total1_AK AeAeg_Aag2_Total2_AK |
PRJNA396680 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 14 | 2017 | Esther Schnettler | AeAeg_sRNAs_Schnettler_Lab_PRJEB15203 | PMC5245901 | AeAeg_Aag2_BUNV1_ES AeAeg_Aag2_BUNV2_ES AeAeg_Aag2_SBV_ES | PRJEB15203 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 15 | 2018 | Francis Jiggins and Phil Zamore | AeAeg_sRNAs_Jiggins_lab_ PRJNA386859 | PMC5732027 | AeAeg_Female_Ovary_FJ |
PRJNA386859 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 16 | 2018 | Joao T. Marques | AeAeg_sRNAs_Marques_Lab_PRJNA401335 | PMID:30374169 | AeAeg_Mid_DissToCar_4dpf_JM AeAeg_Mid_No_diss_4dpf_JM AeAeg_Mid_dsDV_4dpf_JM AeAeg_Whole_injDV_1dpi_JM AeAeg_Whole_injDV_2dpi_JM AeAeg_Whole_injDV_4dpi_JM AeAeg_Whole_injDV_8dpi_JM AeAeg_Whole_undet_4dpf_JM AeAeg_Whole_undet_8dpf_JM AeAeg_Whole_undet_14dpf_JM AeAeg_Whole_lo_4dpf_JM AeAeg_Whole_lo_8dpf_JM AeAeg_Whole_lo_14dpf_JM AeAeg_Whole_hi_4dpf_JM AeAeg_Whole_hi_8dpf_JM AeAeg_Whole_hi_14dpf_JM AeAeg_Mid_diss_2dpf_JM AeAeg_Mid_diss_4dpf_JM AeAeg_Mid_diss_8dpf_JM AeAeg_Carc_diss_2dpf_JM AeAeg_Carc_diss_4dpf_JM AeAeg_Carc_diss_8dpf_JM | PRJNA401335 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 17 | 2019 | Raul Andino | AeAeg_sRNAs_Andino_Lab_PRJNA493127 | PMC6797480 | AeAeg_Aag2_mock_dsFluc_RA AeAeg_Aag2_eGFP_IP_RA AeAeg_Aag2_Piwi4_SINV_RA AeAeg_Aag2_Piwi4_IP1_RA AeAeg_Aag2_Piwi4_IP2_RA AeAeg_Aag2_Ago2_SINV_RA AeAeg_Aag2_Ago2_SINV_Beta_RA AeAeg_Aag2_Ago3_SINV_RA |
PRJNA493127 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 18 | 2019 | Gorben P. Pijlman | AeAeg_sRNAs_Pijlman_Lab_PRJNA525601 | PMC6466260 | AeAeg_Aag2_Mock_GP AeAeg_Aag2_WNV_GP | PRJNA525601 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 19 | 2019 | Gorben P. Pijlman | AeAeg_sRNAs_Pijlman_Lab_PRJNA525617 | PMC6754610 | AeAeg_Whole_ZIKV_In2_GP AeAeg_Whole_ZIKV_In3_GP AeAeg_Whole_ZIKVdr_In2_GP AeAeg_Whole_ZIKVdr_In3_GP AeAeg_Whole_ZIKVdr_BM2_GP AeAeg_Whole_ZIKVdr_BM3_GP AeAeg_Whole_ZIKV_BM2_GP AeAeg_Whole_ZIKV_BM3_GP AeAeg_Whole_ZIKVdr_In_RNA_GP AeAeg_Whole_ZV_In_RNA_GP AeAeg_Whole_ZIKVdr_BM_RNA_GP AeAeg_Whole_ZIKV_BM_RNA_GP |
PRJNA525617 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 20 | 2019 | Omar Akbari | AeAeg_sRNAs_Akbari_Lab_PRJNA475410 | PMC6397566 | AeAeg_sRNA_trans_24PBM |
PRJNA475410 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 21 | 2020 | Nelson Lau | Aag2_CB/NL cells | PMID:33419731 | AeAeg_Aag2 cells from Blair lab to Lau lab | GSE146545 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 22 | 2020 | Nelson Lau, Tonya Colpitts and John Connor | AeAeg_experiment_20181003 | PMID:33419731 | AeAeg_CCL-125_cells |
GSE146545 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 23 | 2020 | Nelson Lau, Tonya Colpitts and Grant Hughes | AeAeg_experiment_20181221 | PMID:33419731 | AeAeg_Aag2_NL_cells |
GSE146545 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 24 | 2020 | Nelson Lau and Tonya Colpitts | AeAeg_Ovary_TC_and_ Aag2_Zika_rerun | PMID:33419731 | From AeAeg_experiment_20181003 + AeAeg_experiment_20190320 | GSE146545 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 25 | 2020 | Nelson Lau and Tonya Colpitts | AeAeg_sRNA_20190320 | PMID:33419731 | AeAeg_Aag2_Ctrl_rep2 |
GSE146545 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 26 | 2020 | Nelson Lau and Tonya Colpitts and Grant Hughes | AeAeg_sRNA_20190530 | PMID:33419731 | AeAeg_Aag2-TC-Dmem |
GSE146545 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
Updated 2021-03-07
