IN PROGRESS - DATABASE SUBJECT TO UPDATES
Please cite: Ma, Srivastav, Gamez. et al. Lau, NC. Genome Research 2021
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We are open to future collaborations for taking in mosquito samples from diverse geographic locations. We can perform the small RNA profiling for your lab and add the outputs to the MSRG. |
Please reach out to Nelson Lau at nclau - at - bu - dot - edu. |
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| We are also interested in other future mosquito species, but we will need to make sure the genome sequence is sufficiently assembled and annotated. For example, we have listed below additional Anopheles species with genome sequences in VectorBase that we would be interested in collaborating with labs to profile their small RNAs for the MSRG. | ||||||||
| # | Study Year | Study PI | Study Name | Pubmed Citation | Cells and Tissues Sampled | NCBI Accesion | Bigwig outputs | Genecentric Outputs | Lengths and miRNAs | piRNA Phasing | Structural RNAs | Transposons | Viruses | Wolbachia | ||
| 1 | In The Future | ? | AnGam collaboration? | To Be Determined | AnGam from South America region 1? AnGam from South America region 2? AnGam from South America region 3? AnGam from South America region 4? |
TBD | LINK |
LINK Cons. LINK |
LINK |
LINK |
LINK | LINK | LINK | LINK | ||
| 2 | ITF | ? | CuQuin collaboration? | TBD | CuQuin from North America region 1? CuQuin from North America region 2? CuQuin from North America region 3? CuQuin from North America region 4? |
TBD | LINK |
LINK Cons. LINK |
LINK | LINK | LINK | LINK | LINK | LINK | ||
| 3 | ITF | ? | AeAeg collaboration? | TBD | AeAeg from Southern USA region 1? AeAeg from Southern USA region 2? |
TBD | LINK |
LINK Cons. LINK |
LINK |
LINK |
LINK | LINK | LINK | LINK | ||
| 4 | ITF | ? | AeAlbo collaboration? | TBD | AeAlbo from Asia region 1? AeAlbo from Asia region 2? AeAlbo from North America region 3? AeAlbo from South America region 4? |
TBD | LINK |
LINK Cons. LINK |
LINK | LINK | LINK | LINK | LINK | LINK | ||
| 5 | ITF | ? | AnStepcollaboration? | TBD | Anopheles stephensi tissues? |
TBD | LINK |
LINK Cons. LINK |
LINK |
LINK |
LINK | LINK | LINK | LINK | ||
| 6 | ITF | ? | AnSinecollaboration? | TBD | Anopheles sinensis tissues ? | TBD | LINK |
LINK Cons. LINK |
LINK | LINK | LINK | LINK | LINK | LINK | ||
| 7 | ITF | ? | AnColucollaboration? | TBD | Anopheles coluzzi tissues? |
TBD | LINK |
LINK Cons. LINK |
LINK |
LINK |
LINK | LINK | LINK | LINK | ||
| 8 | ITF | ? | AnAlbicollaboration? | TBD | Anopheles albimanus tissues ? | TBD | LINK |
LINK Cons. LINK |
LINK | LINK | LINK | LINK | LINK | LINK | ||
| 9 | ITF | ? | AnArabcollaboration? | TBD | Anopheles arabiensis tissues? |
TBD | LINK |
LINK Cons. LINK |
LINK |
LINK |
LINK | LINK | LINK | LINK | ||
| 10 | ITF | ? | AnAtrocollaboration? | TBD | Anopheles atroparvus tissues ? | TBD | LINK |
LINK Cons. LINK |
LINK | LINK | LINK | LINK | LINK | LINK | ||
| 11 | ITF | ? | AnFaracollaboration? | TBD | Anopheles farauti tissues? |
TBD | LINK |
LINK Cons. LINK |
LINK |
LINK |
LINK | LINK | LINK | LINK | ||
| 12 | ITF | ? | AnFreecollaboration? | TBD | Anopheles freeborni tissues ? | TBD | LINK |
LINK Cons. LINK |
LINK | LINK | LINK | LINK | LINK | LINK | ||
| 13 | ITF | ? | AnFunecollaboration? | TBD | Anopheles funestus tissues? |
TBD | LINK |
LINK Cons. LINK |
LINK |
LINK |
LINK | LINK | LINK | LINK | ||
| 14 | ITF | ? | AnMacucollaboration? | TBD | Anopheles maculatus tissues ? | TBD | LINK |
LINK Cons. LINK |
LINK | LINK | LINK | LINK | LINK | LINK | ||
| 15 | ITF | ? | AnMerucollaboration? | TBD | Anopheles merus tissues? |
TBD | LINK |
LINK Cons. LINK |
LINK |
LINK |
LINK | LINK | LINK | LINK | ||
| 16 | ITF | ? | AnQuAncollaboration? | TBD | Anopheles quadriannulatus tissues ? | TBD | LINK |
LINK Cons. LINK |
LINK | LINK | LINK | LINK | LINK | LINK | ||
| 17 | ITF | ? | AnQuMacollaboration? | TBD | Anopheles quadrimaculatus tissues? |
TBD | LINK |
LINK Cons. LINK |
LINK |
LINK |
LINK | LINK | LINK | LINK | ||
| 18 | ITF | ? | TBD | LINK |
LINK Cons. LINK |
LINK | LINK | LINK | LINK | LINK | LINK | |||||
| 19 | ITF | ? | TBD | LINK |
LINK Cons. LINK |
LINK |
LINK |
LINK | LINK | LINK | LINK | |||||
| 20 | ITF | ? | TBD | LINK |
LINK Cons. LINK |
LINK | LINK | LINK | LINK | LINK | LINK |
Updated 2021-01-11
