Additional Items From Sytnikova et al. Genome Research 2014.

C and shell scripts for counting CLIP-seq, RNA-seq, and Nascent-seq reads.
Sytnikova_etal_GenomeRes2014_CShell_Scripts.tar.gz

Perl scripts for de novo TE insertion determination.
Sytnikova_etal_GenomeRes2014_TEInsertion_Scripts.tar.gz

BED files for TE insertion locations in OSC and OSS cell genomes, aligned to D.melanogaster genome Dm3/Release5.
OSS_C_TEs.bed
OSS _E_TEs.bed
OSC_C_TEs.bed
OSC_E_TEs.bed

page updated 20141001