DATABASE SUBJECT TO UPDATES
Please cite: Ma, Srivastav, Gamez. et al. Lau, NC. Genome Research 2021
Click on the Links for MSRG
output files, all based on this specific genome assembly:
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AalbF2 assembly * |
*early stage assembly annotation has an overly-redundant list of gene models | |||||||
| Table S5. Meta-table of sequencing analysis statistics and curated list of genic and intergenic piRNA cluster loci (piRCLs) | Mosquito arborviruses FASTA file: 2020-04-25 | |||||||||
| # | Study Year | Study PI | Study Name | Pubmed Citation | Cells and Tissues Sampled | NCBI Accesion | Bigwig outputs | Genecentric Outputs | Lengths and miRNAs | piRNA Phasing | Structural RNAs | Transposons | Viruses | Wolbachia | ||
| 1 | 2012 | Kevin Myles | AeAlbo_sRNAs_Myles_lab_ SRP008316 | PMC325369 | AeAlbo_CHIKV_3dpi AeAlbo_WholeBody_CHIKV AeAlbo_HeadThor_CHIKV AeAlbo_HeadThor_CHIKV-B2_NOV AeAlbo_HeadThor_CHIKV-deltaB2_NOV AeAlbo_HeadThor_CHIKV-B2_FHV AeAlbo_U4.4_CHIKV AeAlbo_C710_CHIKV AeAlbo_C636_CHIKV AeAlbo_C636_CHIKV_B2_FHV_1 AeAlbo_C636_B2_FHV_c44y_1 AeAlbo_C636_B2_FHV_r54q AeAlbo_C636_CHIKV_B2_FHV_2 AeAlbo_C636_B2_FHV_c44a_2 | GSE32247 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 2 | 2012 | Maria-Carla Saleh and Ronald P. van Rij | AeAlbo_sRNAs_SalehVanRij_lab_SRA047263 | PMC3265520 | AeAlbo_U4-4_SINV_GFP AeAlbo_C636_SINV_GFP AeAlbo_C636_SINV_GFP_betaE | SRA047263 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 3 | 2013 | Xiaoguang Chen and Zhijian Tu | AeAlbo_sRNAs_ChenTu_lab_PRJNA178303 | PMC3698096 | AeAlbo_MaleWhole_CT AeAlbo_FemaleWhole_Sugar_CT AeAlbo_FemaleWhole_BF_CT AeAlbo_Embryo0-1day_CT AeAlbo_Larvae_CT AeAlbo_Pupae_CT |
PRJNA178303 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 4 | 2016 | Maria-Carla Saleh | AeAlbo_sRNAs_Saleh_lab_SRP062828 | PMC5025746 | AeAlbo_U44_CHIKV_AZT_3dpi AeAlbo_U44_CHIKV_3dpi AeAlbo_C636_CHIKV_AZT_3dpi AeAlbo_C636_CHIKV_3dpi AeAlbo_CHIKV_AZT_9dpi AeAlbo_CHIKV_9dpi AeAlbo_CHIKV_AZT_3dpi AeAlbo_CHIKV_3dpi | PRJNA293817 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 5 | 2017 | Juan Santiago Salas-Benito | AeAlbo_sRNAs_Benito_lab_SRP099461 | PMID: 28267608 | AeAlbo_C636HT_cells AeAlbo_C636HT_DENV2_Acute AeAlbo_C636HT_DENV2_Persist | PRJNA374578 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 6 | 2017 | Esther Schnettler | AeAlbo_sRNA_Schnettler_Lab_PRJEB15203 | PMC5245901 | AeAlbo_BUNV_U4.4_rep1_ES AeAlbo_BUNV_U4.4_rep2_ES | PRJEB15203 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 7 | 2018 | Jinbao Gu | AeAlbo_sRNAs_Gu_lab_SRP049501 | PMC5923507 | AeAlbo_FemaleWhole_Denv2_JG AeAlbo_FemaleWhole_Ctrl_JG AeAlbo_FemaleMidgut_Denv2_JG AeAlbo_FemaleMidgut_Ctrl_JG | PRJNA266286 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 9 | 2018 | Nelson Lau and Omar Akbari | AeAlbo_experiment_20181221 | PMID:33419731 | AeAlbo_Ovary_OA AeAlbo_Testis_OA AeAlbo_Fcarc_OA AeAlbo_Mcarc_OA AeAlbo_Larv_OA AeAlbo_U4_4_NL_cells | GSE146545 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 8 | 2018 | Nelson Lau | AeAlbo_experiment_20181003 | PMID:33419731 | AeAlbo_C7-10_NL_cells AeAlbo_C6-36_NL_cells | GSE146545 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 10 | 2019 | Gorben P. Pijlman | AeAlbo_sRNA_Pijlman_Lab_PRJNA525601 | PMC6466260 | AeAlbo_U4.4_Mock_GP AeAlbo_C6-36_Mock_GP AeAlbo_U4.4_WNV_GP AeAlbo_C6-36_WNV_GP | PRJNA525601 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 10 | 2019 | Gregory Ebel | AeAlbo_sRNAs_Ebels_lab_PRJNA533980 | PMC6516063 | AeAlbo_C636_2dpi_mock1 AeAlbo_C636_2dpi_mock2 AeAlbo_C636_2dpi_mock3 AeAlbo_C636_2dpi_SINV1 AeAlbo_C636_2dpi_SINV2 AeAlbo_C636_2dpi_SINV3 AeAlbo_C636_2dpi_WNV1 AeAlbo_C636_2dpi_WNV2 AeAlbo_C636_2dpi_WNV3 AeAlbo_C636_6dpi_mock1 AeAlbo_C636_6dpi_mock2 AeAlbo_C636_6dpi_mock3 AeAlbo_C636_6dpi_SINV1 AeAlbo_C636_6dpi_SINV2 AeAlbo_C636_6dpi_SINV3 AeAlbo_C636_6dpi_WNV1 AeAlbo_C636_6dpi_WNV2 AeAlbo_C636_6dpi_WNV3 | PRJNA533980 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 11 | 2019 | Nelson Lau | AeAlbo_sRNA_20190320 | PMID:33419731 | AeAlbo_C636_NL_cells_rep_3 | GSE146545 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 10 | 2020 | Yasutsugu Suzuki | AeAlbo_sRNA_Suzuki_Lab_PRJNA587399 | PMC7232154 | AeAlbo_VietOvaries_3xV_YS AeAlbo_VietFcar_3xV_YS AeAlbo_VietFem_Whole_YS AeAlbo_JapOvaries_3xV_YS AeAlbo_JapFcar_3xV_YS AeAlbo_VietTestes_3xV_YS AeAlbo_VietMcar_3xV_YS | PRJNA587399 | LINK | LINK | LINK | LINK | LINK | LINK |
Updated 2021-01-11
