MSRG_v1.0 Anopheles gambiae

DATABASE SUBJECT TO UPDATES
Please cite: Ma, Srivastav, Gamez. et al. Lau, NC. Genome Research 2021
Click on the Links for MSRG output files, all based on this specific genome assembly:

AgamP4 assembly

0.28 GB: Chr 2, 3, X, MT
Few unassembled contigs
~13.1K gene models (GTF)

AnGam Repeats (Reduced) FASTA file: 2020-04-25

AnGam Repeats (Reduced) GFF: 2020-04-25

Table S2. Meta-table of sequencing analysis statistics and curated list of genic and intergenic piRNA cluster loci (piRCLs)

Mosquito arborviruses FASTA file: 2020-04-25

Study Year

Study PI

Study Name

Pubmed Citation

Cells and Tissues Sampled

NCBI Accesion

Bigwig outputs

Genecentric Outputs

Lengths and miRNAs

piRNA Phasing

Structural RNAs

Transposons

Viruses

Wolbachia

2015

Tony Nolan

AnGam_sRNAs_ Castellano_ PMC4345017

PMC4345017

AnGam_larvae_male_TN AnGam_larvae_testes_TN AnGam_larvae_female_TN AnGam_larvae_ovaries_TN AnGam_adult_testes_TN AnGam_adult_ovaries_sugar_TN

2015

Inna Biryukova

AnGam_sRNAs_Biryukova_ GSE50396

PMC4423592

AnGam_larvae_male_TN AnGam_larvae_testes_TN AnGam_larvae_female_TN

2019

Kristin Michel

AnGam_sRNA_Michel_Lab_PRJNA435430

PMC6505144

AnGam_Fem_Fat_body_rep1_KM AnGam_Fem_Fat_body_rep2_KM AnGam_Fem_Fat_body_rep3_KM AnGam_Fem_Head_and_Thorax_rep1_KM AnGam_Fem_Head_and_Thorax_rep2_KM AnGam_Fem_Head_and_Thorax_rep3_KM AnGam_Fem_Midgut_rep1_KM AnGam_Fem_Midgut_rep2_KM AnGam_Fem_Midgut_rep3_KM AnGam_Ovaries_rep1_KM AnGam_Ovaries_rep2_KM AnGam_Ovaries_rep3_KM

2020

Nelson Lau

AnGam_exp_20181221

PMID:33419731

AnGam_Ovaries_TN
AnGam_Fcarc_TN
AnGam_Testes_TN
AnGam_Mcarc_TN

GSE146545

LINK

Cons. LINK