DATABASE SUBJECT TO UPDATES
Please cite: Ma, Srivastav, Gamez. et al. Lau, NC. Genome Research 2021
Click on the Links for MSRG output files, all based on this specific genome assembly:

 

   

CpipJ2 assembly
0.58 GB: no Chromosomes, only 3172 super-contigs
~19.8K gene models

 

CuQuin Repeats (Reduced) FASTA file: 2020-04-25

 

CuQuin Repeats (Reduced) GFF: 2020-04-25

     
    Table S3. Meta-table of sequencing analysis statistics and curated list of genic and intergenic piRNA cluster loci (piRCLs)   Mosquito arborviruses FASTA file: 2020-04-25      
                       


# Study Year Study PI Study Name Pubmed Citation Cells and Tissues Sampled NCBI Accesion   Bigwig outputs Genecentric Outputs Lengths and miRNAs piRNA Phasing Structural RNAs Transposons Viruses Wolbachia  
1 2019 Greg Ebel CuQuin_sRNAs_Ebels_lab_ PRJNA533980 PMC6516063 CuQuin_MG_7dpi1 CuQuin_MG_7dpi2 CuQuin_MG_7dpi3 CuQuin_SG_14dpi1 CuQuin_SG_14dpi2 CuQuin_SG_14dpi3 CuQuin_Hsu_17dpi_WNV1 CuQuin_Hsu_17dpi_WNV2 CuQuin_Hsu_17dpi_WNV3 CuQuin_Hsu_2dpi_mock1 CuQuin_Hsu_2dpi_mock2 CuQuin_Hsu_2dpi_mock3 CuQuin_Hsu_2dpi_WNV1 CuQuin_Hsu_2dpi_WNV2 CuQuin_Hsu_2dpi_WNV3 CuQuin_Hsu_30dpi_WNV1 CuQuin_Hsu_30dpi_WNV2 CuQuin_Hsu_30dpi_WNV3 CuQuin_Hsu_6dpi_mock1 CuQuin_Hsu_6dpi_mock2 CuQuin_Hsu_6dpi_mock3 CuQuin_Hsu_6dpi_WNV1 CuQuin_Hsu_6dpi_WNV2 CuQuin_Hsu_6dpi_WNV3 PRJNA533980  

LINK

LINK

Cons. LINK

LINK LINK LINK LINK LINK LINK  
2 2020 Nelson Lau and Doug Brackney CuQuin_sRNA_20190320 PMID:3341973 CuQuin_Hsu_NL GSE146545  

LINK

LINK

Cons. LINK

LINK LINK LINK LINK LINK LINK  
3 2020 Nelson Lau CuQuin_sRNA_20190530 PMID:3341973

CuQuin_Fcarc_NL
CuQuin_Mcarc_NL
CuQuin_Ovary_NL
CuQuin_Testes_NL

GSE146545  

LINK

LINK

Cons. LINK

LINK LINK LINK LINK LINK LINK  
4                                
5                                
6                                

 
Updated 2021-03-10
PHP Hits Count

Disclaimer