DATABASE SUBJECT TO UPDATES
Please cite: Ma, Srivastav, Gamez. et al. Lau, NC. Genome Research 2021
Click on the Links for MSRG
output files, all based on this specific genome assembly:
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CpipJ2 assembly |
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| Table S3. Meta-table of sequencing analysis statistics and curated list of genic and intergenic piRNA cluster loci (piRCLs) | Mosquito arborviruses FASTA file: 2020-04-25 | ||||||||||
| # | Study Year | Study PI | Study Name | Pubmed Citation | Cells and Tissues Sampled | NCBI Accesion | Bigwig outputs | Genecentric Outputs | Lengths and miRNAs | piRNA Phasing | Structural RNAs | Transposons | Viruses | Wolbachia | ||
| 1 | 2019 | Greg Ebel | CuQuin_sRNAs_Ebels_lab_ PRJNA533980 | PMC6516063 | CuQuin_MG_7dpi1 CuQuin_MG_7dpi2 CuQuin_MG_7dpi3 CuQuin_SG_14dpi1 CuQuin_SG_14dpi2 CuQuin_SG_14dpi3 CuQuin_Hsu_17dpi_WNV1 CuQuin_Hsu_17dpi_WNV2 CuQuin_Hsu_17dpi_WNV3 CuQuin_Hsu_2dpi_mock1 CuQuin_Hsu_2dpi_mock2 CuQuin_Hsu_2dpi_mock3 CuQuin_Hsu_2dpi_WNV1 CuQuin_Hsu_2dpi_WNV2 CuQuin_Hsu_2dpi_WNV3 CuQuin_Hsu_30dpi_WNV1 CuQuin_Hsu_30dpi_WNV2 CuQuin_Hsu_30dpi_WNV3 CuQuin_Hsu_6dpi_mock1 CuQuin_Hsu_6dpi_mock2 CuQuin_Hsu_6dpi_mock3 CuQuin_Hsu_6dpi_WNV1 CuQuin_Hsu_6dpi_WNV2 CuQuin_Hsu_6dpi_WNV3 | PRJNA533980 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 2 | 2020 | Nelson Lau and Doug Brackney | CuQuin_sRNA_20190320 | PMID:3341973 | CuQuin_Hsu_NL | GSE146545 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
| 3 | 2020 | Nelson Lau | CuQuin_sRNA_20190530 | PMID:3341973 | CuQuin_Fcarc_NL |
GSE146545 | LINK | LINK | LINK | LINK | LINK | LINK | ||||
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| 6 |
Updated 2021-03-10
