You can access "Search by Species" page through the navigation bar or the first image icon in the home page.
Here you can choose one of the four species and explore their transposon distribution.
You can access "Search by Class" page through the navigation bar or the second image icon in the home page.
You can choose a Transposon Class and explore their order and superfamily distribution.
Pie Chart Visualization of Transposon Order Distributions withint DNA Transposon Class.
You can access the "Search by Order" page through the navigation bar or the second image icon in the home page.
Start typing in the name of a transposon order. Options will autofill depending on the content of the database.
Once you have selected an order, you will see the following:
- a breakdown of all orders across all transposons in the database
- a breakdown of all orders by species across all transposons in the database
- the distribution of the selected order across all species in the database
Browse all entries in the database by accessing the 'Browse Database' page.
Filter entries by species, class, order, and/or superfamily.
Multiple filters can be applied at once.
Selecting a classification within the table will query it in the Dfam database.
Results will load in a new tab.
Data corresponding to selected filters can be downloaded in fasta format.
Choose either a .txt or .fa extension.
2: Pischedda E et al. Insights Into an Unexplored Component of the Mosquito Repeatome: Distribution and Variability of Viral Sequences Integrated Into the Genome of the Arboviral Vector Aedes albopictus. Front Genet. 2019 Feb 12;10:93. doi: 10.3389/fgene.2019.00093. eCollection 2019.
3: Bourque G, Burns KH, Gehring M, Gorbunova V, Seluanov A, Hammell M, Imbeault M, Izsvák Z, Levin HL, Macfarlan TS, Mager DL, Feschotte C (November 2018). "Ten things you should know about transposable elements". Genome Biology. 19 (1): 199.
4: Bucher E, Reinders J, Mirouze M (November 2012). "Epigenetic control of transposon transcription and mobility in Arabidopsis". Current Opinion in Plant Biology. 15 (5): 503–10.